{"id":388,"date":"2020-05-29T13:28:57","date_gmt":"2020-05-29T13:28:57","guid":{"rendered":"https:\/\/blog.praxilabs.com\/?p=388"},"modified":"2025-10-11T19:22:18","modified_gmt":"2025-10-11T19:22:18","slug":"western-blot-concept","status":"publish","type":"post","link":"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/","title":{"rendered":"The Concept, Processes, and Applications of Western Blotting"},"content":{"rendered":"<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Western blot<span style=\"font-weight: 400;\"> is an indispensable mechanism in the modern biomedical research laboratory, as well as in laboratories doing research in other areas. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">This technique is routinely used now for research purposes, for instance, clinical medical laboratories.\u00a0<\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Western blot can be used to identify a specific protein in a sample. Also, it provides information about protein<span style=\"font-weight: 400;\"> size and relative abundance in the sample.<\/span><\/span><\/p>\n<p style=\"text-align: center;\"><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><strong><a class=\"maxbutton-3 maxbutton\" href=\"https:\/\/praxilabs.com\/en\/sign-up\"><span class='mb-text'>Try Western Blot Simulation For FREE<\/span><\/a><\/strong><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">Western blot is sometimes called \u201c<\/span><span style=\"font-weight: 400;\">protein immunoblot\u201d or \u201cwestern blotting.\u201d<\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">It is considered as an analytical technique used mainly in molecular biology and <\/span><a href=\"https:\/\/en.wikipedia.org\/wiki\/Immunogenetics\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">immunogenetics<\/span><\/a><span style=\"font-weight: 400;\"> where <\/span><span style=\"font-weight: 400;\">antibodies are used to specifically detect their antigen. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">The term &#8220;blotting&#8221; refers to the transfer of biological samples from a gel to a membrane and their subsequent detection on the surface of the membrane.<\/span><\/span><\/p>\n<p>&nbsp;<\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-1133 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/western-blot.jpg\" alt=\"applications of western blotting\" width=\"2560\" height=\"2048\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/western-blot.jpg 2560w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/western-blot-300x240.jpg 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/western-blot-1024x819.jpg 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/western-blot-768x614.jpg 768w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/western-blot-1536x1229.jpg 1536w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/western-blot-2048x1638.jpg 2048w\" sizes=\"auto, (max-width: 2560px) 100vw, 2560px\" \/><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The development of the protein blotting techniques is credited to &#8220;Harry Towbin.&#8221; In 1978 &#8220;Harry Towbin&#8221; was hired by &#8220;Julian Gordon&#8221; at the &#8220;Friedrich-Miescher-Institute&#8221; in Basel for a postdoctoral fellowship. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">&#8220;Harry&#8221; and &#8220;Julian&#8221; worked in cooperation with &#8220;Theo Staehelin,&#8221; a pioneer in the field of initiation factors for mammalian protein synthesis who had ample expertise in ribosomes.\u00a0<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In 1979 they published a paper entitled \u201c<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/388439\/\" target=\"_blank\" rel=\"noopener\">Electrophoretic Transfer<\/a> of Proteins From Polyacrylamide Gels to Nitrocellulose Sheets: Procedure and Some Applications.\u201d This paper provides the beginning of the protein blotting techniques.\u00a0<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-389 size-full aligncenter\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/JulianGordon-headshot-2-e1529079303802-350x350-1.jpg\" alt=\"Julian Gordon - western blot\" width=\"350\" height=\"350\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/JulianGordon-headshot-2-e1529079303802-350x350-1.jpg 350w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/JulianGordon-headshot-2-e1529079303802-350x350-1-300x300.jpg 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/JulianGordon-headshot-2-e1529079303802-350x350-1-150x150.jpg 150w\" sizes=\"auto, (max-width: 350px) 100vw, 350px\" \/><\/span><\/p>\n<p>&nbsp;<\/p>\n<p style=\"text-align: center;\"><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><strong>Try PraxiLabs <a href=\"https:\/\/praxilabs.com\/en\/virtual-biology-lab\">Virtual Biology Lab<\/a> For FREE and Enjoy Science Education Anywhere and Anytime<\/strong><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Before discussing the principal and applications of western blotting technique . We need to clarify some definitions similar to western blot such as <a href=\"https:\/\/www.chemistryworld.com\/news\/eastern-blot-on-the-landscape\/3001376.article\" target=\"_blank\" rel=\"nofollow noopener\">eastern blot<\/a>, northern blot, and northwestern blot.\u00a0<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">Actually, the eastern blot <\/span><span style=\"font-weight: 400;\">can be considered as an extension of the biochemical technique of <\/span><span style=\"font-weight: 400;\">western blot a<\/span><span style=\"font-weight: 400;\">nd it is <\/span><span style=\"font-weight: 400;\">often used to detect <\/span><span style=\"font-weight: 400;\">carbohydrate<\/span> <span style=\"font-weight: 400;\">epitopes<\/span><span style=\"font-weight: 400;\">. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">On another front, <a href=\"https:\/\/www.nature.com\/scitable\/definition\/northern-blot-287\/#:~:text=A%20northern%20blot%20is%20a,RNA%20expression%20of%20particular%20genes.\" target=\"_blank\" rel=\"nofollow noopener\">northern blot<\/a> also called RNA blot <\/span><span style=\"font-weight: 400;\">is a technique used in <\/span><span style=\"font-weight: 400;\">molecular biology<\/span><span style=\"font-weight: 400;\"> research to study <\/span><span style=\"font-weight: 400;\">gene expression<\/span><span style=\"font-weight: 400;\"> by detection of <\/span><span style=\"font-weight: 400;\">RNA<\/span><span style=\"font-weight: 400;\"> (or isolated <\/span><a href=\"https:\/\/en.wikipedia.org\/wiki\/MRNA\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">mRNA<\/span><\/a><span style=\"font-weight: 400;\">) in a sample. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">By combining the northern and western blot, this produced a hybrid called northwestern blot which was used in <\/span><a href=\"https:\/\/en.wikipedia.org\/wiki\/Molecular_biology\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">molecular biology<\/span><\/a><span style=\"font-weight: 400;\"> to detect interactions between <\/span><span style=\"font-weight: 400;\">RNA<\/span><span style=\"font-weight: 400;\"> and <\/span><span style=\"font-weight: 400;\">proteins<\/span><span style=\"font-weight: 400;\">.<\/span><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Through the following lines, we will discuss the western blot technique in detail, its applications, and how to perform it.<\/span><\/p>\n<div id=\"ez-toc-container\" class=\"ez-toc-v2_0_82_2 counter-hierarchy ez-toc-counter ez-toc-light-blue ez-toc-container-direction\">\r\n<div class=\"ez-toc-title-container\">\r\n<p class=\"ez-toc-title\" style=\"cursor:inherit\">Table of Contents<\/p>\r\n<span class=\"ez-toc-title-toggle\"><\/span><\/div>\r\n<nav><ul class='ez-toc-list ez-toc-list-level-1 ' ><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-1\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Principle_of_Work\" >Principle of Work<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-2\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Process_of_Western_Blot_Experiment\" >Process of Western Blot Experiment<\/a><ul class='ez-toc-list-level-3' ><li class='ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-3\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Introduction\" >Introduction<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-4\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Preparing_Samples\" >Preparing Samples<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-5\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Electrophoretic_Separation_of_Proteins\" >Electrophoretic Separation of Proteins<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-6\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Transferring_Proteins_to_A_Membrane\" >Transferring Proteins to A Membrane<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-7\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Blocking_Nonspecific_Sites\" >Blocking Nonspecific Sites<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-8\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Detection_Methods\" >Detection Methods<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-9\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Imaging\" >Imaging<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-10\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Analysis\" >Analysis<\/a><\/li><\/ul><\/li><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-11\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#What_are_the_advantages_of_Western_blotting\" >What are the advantages of Western blotting?<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-12\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Applications_of_Western_Blotting\" >Applications of Western Blotting<\/a><ul class='ez-toc-list-level-3' ><li class='ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-13\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Western_Blot_Applications_in_Biological_Sciences\" >Western Blot Applications in Biological Sciences<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-3'><a class=\"ez-toc-link ez-toc-heading-14\" href=\"https:\/\/praxilabs.com\/en\/blog\/2020\/05\/29\/western-blot-concept\/#Western_Blot_Applications_in_Medical\" >Western Blot Applications in Medical<\/a><\/li><\/ul><\/li><\/ul><\/nav><\/div>\r\n<h2><span class=\"ez-toc-section\" id=\"Principle_of_Work\"><\/span><span style=\"font-size: 18pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Principle of Work<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h2>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Western blot is a commonly used technique designed to study a specific protein in a sample containing many other proteins. <\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400; font-size: 14pt;\">Proteins in the sample are <\/span><span style=\"font-size: 14pt;\"><span style=\"font-weight: 400;\">extracted then separated by <\/span><span style=\"font-weight: 400;\">gel<\/span><span style=\"font-weight: 400;\"> electrophoresis<\/span><span style=\"font-weight: 400;\"> (SDS-PAGE) according to their molecular weight. Then, the proteins are electrophoretically transferred (blotted) to a more durable surface (e.g. nitrocellulose or PVDF membrane). <\/span><\/span><\/span><\/p>\n<p style=\"text-align: left;\"><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">Finally, a specific antibody is used to detect the protein of interest. The bound and labeled protein can be visualized giving information about its molecular weight and relative quantity.<\/span><\/span><\/p>\n<p><iframe loading=\"lazy\" title=\"Western Blot Technique Explained: A Comprehensive Tutorial\" width=\"618\" height=\"348\" src=\"https:\/\/www.youtube.com\/embed\/sldmSbygsSI?feature=oembed&#038;enablejsapi=1&#038;origin=https:\/\/praxilabs.com\" frameborder=\"0\" allow=\"accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share\" referrerpolicy=\"strict-origin-when-cross-origin\" allowfullscreen><\/iframe><\/p>\n<p style=\"text-align: left;\"><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Watch the walkthrough video and get a full understanding of how to conduct the western blot simulation in PraxiLabs&#8217; Virtual Science Labs. <\/span><\/p>\n<h2><span class=\"ez-toc-section\" id=\"Process_of_Western_Blot_Experiment\"><\/span><span style=\"font-size: 18pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Process of Western Blot Experiment<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h2>\n<h3 style=\"text-align: justify;\"><span class=\"ez-toc-section\" id=\"Introduction\"><\/span><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Introduction<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">The western blotting method was proposed first by <\/span><span style=\"font-weight: 400;\">Towbin<\/span><span style=\"font-weight: 400;\"> in 1979 as we mentioned above. The main Idea of the Western blotting as stated is detecting and analyzing proteins. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">It relies on the blotting technique which involves transferring proteins after electrophoresis separates them from the gel to a membrane, then they can be ready to be visualized.<\/span><\/span><\/p>\n<p style=\"text-align: justify;\"><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-402 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/12333-min-scaled.jpg\" alt=\"intoduction of western blotting\" width=\"2560\" height=\"1707\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/12333-min-scaled.jpg 2560w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/12333-min-300x200.jpg 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/12333-min-1024x683.jpg 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/12333-min-768x512.jpg 768w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/12333-min-1536x1024.jpg 1536w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/12333-min-2048x1365.jpg 2048w\" sizes=\"auto, (max-width: 2560px) 100vw, 2560px\" \/><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">After preparing and loading the sample onto a gel, the electrophoresis process starts and the negatively charged proteins move toward the positively charged anode. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">After the electrophoresis phase, the protein must be transferred from the gel to a <\/span><a href=\"https:\/\/www.thermofisher.com\/eg\/en\/home\/life-science\/protein-biology\/protein-assays-analysis\/western-blotting\/transfer-proteins-western-blot\/membranes-transfer-buffers-western-blotting.html\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">membrane<\/span><\/a><span style=\"font-weight: 400;\"> In order to further analyze proteins, the procedure of transferring them onto a membrane is called blotting.\u00a0<\/span><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">To prevent unwanted membrane-protein interaction, the membrane must be blocked after the transfer. Then the membrane is commonly first probed using a primary protein-specific antibody followed by a labeled secondary antibody used for detection in order to visualize the targeted protein.\u00a0\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The estimation of protein size can be achieved by adding a separate marker solution to one of the wells in the gel. In addition, the antibody interactions are used to verify specific protein.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The size is not the only factor that causes the separation on the gel, the separation could be due to the molecular charge, hydrophobic regions, and degree of denaturation.\u00a0<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-408 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/7938-min-scaled.jpg\" alt=\"Process of Western Blot Experiment\" width=\"2560\" height=\"1703\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/7938-min-scaled.jpg 2560w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/7938-min-300x200.jpg 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/7938-min-1024x681.jpg 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/7938-min-768x511.jpg 768w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/7938-min-1536x1022.jpg 1536w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/7938-min-2048x1363.jpg 2048w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/7938-min-310x205.jpg 310w\" sizes=\"auto, (max-width: 2560px) 100vw, 2560px\" \/><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The outcome of a western blot technique depends on three important factors:\u00a0<\/span><\/p>\n<ol>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The ability of the antibody to bind a specific protein.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The strength of the interaction.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The concentration of the protein of interest itself.\u00a0<\/span><\/li>\n<\/ol>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Moreover, the specificity of the binding to the target and low cross-reactivity are important features as well. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The results of the western blot are not always easy to interpret as the size of the protein may vary from the theoretical weight due to posttranslational modifications, such as glycosylation, or interactions with other proteins. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">However, the <a href=\"https:\/\/praxilabs.com\/en\/3d-simulations\/western-blot-biology-virtual-lab-simulation\">western blot<\/a> is a very common method and almost all available commercial antibodies have been validated using this method.<\/span><\/p>\n<h3><span class=\"ez-toc-section\" id=\"Preparing_Samples\"><\/span><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Preparing Samples<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In the first step, samples are prepared and loaded on to a gel. Your sample could be tissue, cells, or other solution, that you want to extract and analyze its protein.\u00a0<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-1134 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/sample-preparation.png\" alt=\"sample preparation - Process of Western Blot Experiment\" width=\"1366\" height=\"768\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/sample-preparation.png 1366w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/sample-preparation-300x169.png 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/sample-preparation-1024x576.png 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/sample-preparation-768x432.png 768w\" sizes=\"auto, (max-width: 1366px) 100vw, 1366px\" \/><\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400; font-size: 14pt;\">Using blending, homogenization, or sonication, the tissue will be broken down. While t<\/span><span style=\"font-weight: 400; font-size: 14pt;\">he buffers and inhibitor will play their role. Adding buffers will lead to lyse the cells and solubilize the proteins, where the adding of inhibitors will prevent denaturation or degradation.\u00a0<\/span><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">You can apply various types of filtration and centrifugation methods for further preparation for the samples.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Take in mind that the determination of total protein concentration of the generated extract is important to be able to load a specific amount on the gel to enable comparison between samples.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The extract will then be diluted with a loading buffer consisting of glycerol and a dye. The importance of the glycerol is raising the density to simplify the loading and the dye is used to visualize the sample. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">To break the structures of the protein you will apply heat on the samples, which will help to keep the negative charge from neutralization. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">It is better to include the positive and negative controls in the set up to confirm the identity of the protein as well as the activity of the antibody.<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-1135 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/electrophoresis-1.png\" alt=\"Process ofelectrophoresis - Western Blot Experiment\" width=\"1366\" height=\"768\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/electrophoresis-1.png 1366w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/electrophoresis-1-300x169.png 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/electrophoresis-1-1024x576.png 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/electrophoresis-1-768x432.png 768w\" sizes=\"auto, (max-width: 1366px) 100vw, 1366px\" \/><\/span><\/p>\n<h3><span class=\"ez-toc-section\" id=\"Electrophoretic_Separation_of_Proteins\"><\/span><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Electrophoretic Separation of Proteins<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Gel electrophoresis is a technique in which charged molecules such as protein are separated according to physical properties as they are forced through a gel by an electrical current.\u00a0<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">After your sample is ready to be loaded to separate the proteins according to size by gel electrophoresis. Apply the electric field over the gel to separate the charged molecules. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">This method is called polyacrylamide <a href=\"https:\/\/praxilabs.com\/en\/3d-simulations\/dna-fingerprinting-using-gel-electrophoresis-simulation\">gel electrophoresis<\/a> (PAGE) which is used to apply the separation step for proteins when using native condition. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">PAGE is a powerful analytical tool providing information on the mass, charge, purity, or presence of a protein.<\/span><\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-1136 size-full aligncenter\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Polyacrylamide-Gel-Electrophoresis-PAGE.jpg\" alt=\"Polyacrylamide-Gel-Electrophoresis-PAGE\" width=\"800\" height=\"420\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Polyacrylamide-Gel-Electrophoresis-PAGE.jpg 800w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Polyacrylamide-Gel-Electrophoresis-PAGE-300x158.jpg 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Polyacrylamide-Gel-Electrophoresis-PAGE-768x403.jpg 768w\" sizes=\"auto, (max-width: 800px) 100vw, 800px\" \/><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Then sodium dodecyl sulfate (SDS) is added to the system in order to provide the denaturing conditions, so the method is called SDS-PAGE. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The role of the SDS is to bind to the protein to form a micelle with a negative charge around the protein regardless of its inherent charge.\u00a0<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">The importance of the denaturing condition can be concluded in the dissolving of the tridimensional structure of the proteins and<\/span><span style=\"font-weight: 400;\"> they gain a negative charge in proportion to their molecular size, then they travel in the acrylamide gel according to their molecular sizes. The smaller the size of the running protein, the faster it travels through the pores of the gel.<\/span><\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-1137 size-full aligncenter\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Process-of-Western-Blot-Experiment.jpg\" alt=\"Process of Western Blot Experiment\" width=\"512\" height=\"458\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Process-of-Western-Blot-Experiment.jpg 512w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Process-of-Western-Blot-Experiment-300x268.jpg 300w\" sizes=\"auto, (max-width: 512px) 100vw, 512px\" \/><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">At the native conditions, the mobility will depend on both charge and hydrodynamic size allowing detection of changes in charge due to chemical degradation, conformational changes due to folding or unfolding, aggregation, or other binding events.<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The used gel here is divided into two parts that differ in densities:\u00a0<\/span><\/p>\n<ol>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Stacking gel.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Separating gel.\u00a0<\/span><\/li>\n<\/ol>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400; font-size: 14pt;\">These two sections have different pH and gel concentration values. On one hand,<\/span><span style=\"font-weight: 400; font-size: 14pt;\">\u00a0acidic pH and lower concentration of the stacking gel cause poor separation for the proteins. But it allows them to form highly defined sharp bands before they enter the separating gel.<\/span><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">On the other hand, the basic conditions and higher gel concentration of the separating gel make proteins differentiate by size, as smaller proteins travel faster in the gel than bigger ones. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Precast gels are convenient; however, it is possible to cast them by hand.<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400; font-size: 14pt;\">The gel is immersed in the buffer and the protein samples and markers are loaded to the wells in the gel. Then b<\/span><span style=\"font-weight: 400; font-size: 14pt;\">y applying a voltage on the gel, the proteins will start to move due to their negative electrical charge. <\/span><\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400; font-size: 14pt;\">You must u<\/span><span style=\"font-weight: 400; font-size: 14pt;\">se suitable voltage, as the too high voltage will overheat the gel and maybe deform the bands.<\/span><\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-1138 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/transfer.png\" alt=\"Process of Transfer - Western Blot Experiment\" width=\"1366\" height=\"768\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/transfer.png 1366w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/transfer-300x169.png 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/transfer-1024x576.png 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/transfer-768x432.png 768w\" sizes=\"auto, (max-width: 1366px) 100vw, 1366px\" \/><\/span><\/p>\n<h3><span class=\"ez-toc-section\" id=\"Transferring_Proteins_to_A_Membrane\"><\/span><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Transferring Proteins to A Membrane<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Now you have finished the gel electrophoresis phase, and the following step is transferring the protein to the solid support membrane. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Your tools in this step will include sponges, filter papers, the gel, and the membrane, which is placed between the gel and the positive electrode.\u00a0 <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In this process, you need to apply voltage to transfer the negatively charged proteins from the gel to the membrane.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The main types of membrane are:<\/span><\/p>\n<ol>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Nylon.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Nitrocellulose.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Polyvinylidene fluoride (PVDF).<\/span><\/li>\n<\/ol>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The nylon membranes cause high background binding and irreversible staining of some dyes which makes them less common than the other two types of membrane, although they are superior in other several aspects.<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">The nitrocellulose membranes have a special advantage which is the low background regardless of the detection method<\/span><span style=\"font-weight: 400;\">.<\/span> <\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">But the nitrocellulose membranes should not be used for the transfer of proteins with low molecular weight, that is due to the relatively large average pore size,. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">Furthermore, the membrane becomes brittle when they are dry, which makes them difficult to handle.\u00a0<\/span><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Regarding the PVDF membrane allows relabeling and it is more convenient to store due to its stability. In addition to the hydrophobic nature of PVDF provides high protein binding capacity, however, as a consequence, the background is also higher.<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-1139 size-full aligncenter\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/transfer2.jpg\" alt=\"transfer\" width=\"438\" height=\"207\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/transfer2.jpg 438w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/transfer2-300x142.jpg 300w\" sizes=\"auto, (max-width: 438px) 100vw, 438px\" \/><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Regarding the methods of blotting you will have two methods:\u00a0<\/span><\/p>\n<ol>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The wet method.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The semi-dry method.\u00a0<\/span><\/li>\n<\/ol>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In the Semi-dry blotting less volume of buffer is needed and it is more rapid than the wet conditions. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">This transfer method is usually less efficient, especially for larger proteins, and it may cause overheating and drying the gel when using extended transfer times.<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">At the same time, the wet method is preferred when the transfer must be efficient and give high quality regarding distinct and sharp bands. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Moreover, It is the most suitable choice for the transfer of larger protein complexes. <\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400; font-size: 14pt;\">The gel, membrane, and filter papers are completely immersed in the buffer during the transfer and there is no risk of drying out the gel. <\/span><\/span><\/p>\n<p style=\"text-align: center;\"><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><strong><a class=\"maxbutton-3 maxbutton\" href=\"https:\/\/praxilabs.com\/en\/pricing\"><span class='mb-text'>Pick The Best Virtual Plan for You<\/span><\/a><\/strong><\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-1140 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/blocking.png\" alt=\"Process of blocking- Western Blot Experiment\" width=\"1366\" height=\"768\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/blocking.png 1366w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/blocking-300x169.png 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/blocking-1024x576.png 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/blocking-768x432.png 768w\" sizes=\"auto, (max-width: 1366px) 100vw, 1366px\" \/><\/span><\/p>\n<h3><span class=\"ez-toc-section\" id=\"Blocking_Nonspecific_Sites\"><\/span><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Blocking Nonspecific Sites<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">After the transferring of the proteins to membrane you need to prevent nonspecific binding of the antibodies to the membrane, rather than binding the protein of interest, a substance is used to block out the residual sites on the membrane. This is the fourth step, which is the antibody probing.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The substances that are commonly used are :<\/span><\/p>\n<ol>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Dried nonfat milk.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">5% Bovine Serum Albumin (BSA) diluted in Tris Buffered Saline Tween (TBST).<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Normal goat serum.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Casein.<\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Fish gelatin.<\/span><\/li>\n<\/ol>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Milk is inexpensive and easy to get hold of, however not suitable for all detection labels. And the fish gelatin can mask some proteins but it gives lower background as well as being a relatively expensive blocking buffer.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">With regard to BSA, it is inexpensive, whereas serum can contain immunoglobulins giving rise to cross-reactivity. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Be careful during the selection of the blocking agent as it is considered as the key since none of the blocking buffers are ideal for all different antigen-antibody interactions.\u00a0<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-416 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/BSA.png\" alt=\"b-\u00a05% Bovine Serum Albumin (BSA) diluted in Tris Buffered Saline Tween (TBST).\" width=\"1366\" height=\"768\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/BSA.png 1366w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/BSA-300x169.png 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/BSA-1024x576.png 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/BSA-768x432.png 768w\" sizes=\"auto, (max-width: 1366px) 100vw, 1366px\" \/><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The blocking procedure consists of incubating the membrane in the appropriate blocking buffer for an hour or longer. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">You should perform the blocking procedure at +4\u00b0C if you are using long incubation times to rule out the risk of staining artifacts or background.<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"> And take into consideration that you must achieve a delicate balance between reducing the background without decreasing the signal from the protein of interest.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The blocked membrane now is incubated with the primary antibody. The antibody is diluted to a suitable concentration in TBST, phosphate-buffered saline (PBS), or wash buffer. If the antibody is going to be reused, It is preferred to incubate the antibody with BSA.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Then after washing the membrane, the membrane will be incubated with the secondary antibody that binds to the primary antibody. The secondary antibody is labeled with a reporter.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">When using a polyclonal antibody as a secondary antibody, it may give rise to some background. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In the case of background staining, the secondary antibody may be pre-blocked with non-immune serum from the host it was generated in.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Optimization of the concentration of the secondary antibody is recommended due to quite extended variations between antibodies as well as detection systems used.<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-1141 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/detection.png\" alt=\"Detection Methods - western blot\" width=\"1366\" height=\"768\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/detection.png 1366w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/detection-300x169.png 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/detection-1024x576.png 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/detection-768x432.png 768w\" sizes=\"auto, (max-width: 1366px) 100vw, 1366px\" \/><\/span><\/p>\n<h3><span class=\"ez-toc-section\" id=\"Detection_Methods\"><\/span><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Detection Methods<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">In the detection step, the protein-antibody-antibody complex is detected on the membrane.<\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"> <span style=\"font-weight: 400;\">There are various detection systems, based on chemiluminescence, chemifluorescence, fluorescence, chromogenic, or radioisotopic detection are available. <\/span><\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-size: 14pt;\"><span style=\"font-weight: 400;\">Amongst enzymes, the most common is HRP used together with<\/span> <span style=\"font-weight: 400;\">chemiluminescent, chemifluorescent, or chromogenic substances. <\/span><\/span><span style=\"font-size: 14pt;\"><span style=\"font-weight: 400;\">HRP has several advantages over other enzymes such as alkaline phosphatase (AP). <\/span><\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">Also, it can be easily conjugated to antibodies or streptavidin which binds with extraordinarily high affinity to biotin, a commonly used tag, and can be used with different chemiluminescent reagents. <\/span><span style=\"font-weight: 400;\">In addition, it has a high substrate specificity giving a low background, stable, and inexpensive.\u00a0<\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">The most commonly used enzymatic detection system is chemiluminescence, based on antibodies conjugated to horseradish peroxidase (HRP). <\/span><span style=\"font-weight: 400;\">\u00a0<\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">The HRP enzyme catalyzes the oxidation of luminol from the luminol peroxide detection reagent. The multi-step reaction <\/span><span style=\"font-weight: 400;\">resulting in light emission<\/span><span style=\"font-weight: 400;\">. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">You can use some chemicals like phenols that can enhance the emitted light.\u00a0<\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">A direct method is the use of fluorescence. <\/span><span style=\"font-weight: 400;\">Fluorescence-based detection systems use a fluorescent entity, or fluorophore, directly conjugated to an antibody or streptavidin. <\/span><\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">The fluorophore can be excited using a light source of a specific wavelength causing light emission.<\/span> <\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><span style=\"font-weight: 400;\">It is well suitable for quantitative western blot and since different fluorophores emit light of different wavelengths it is possible to perform multiplexing and specific detection of more than one protein at the time.\u00a0<\/span><\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">So the chemifluorescence is defined as using a chemical and\/or an enzyme to induce the generation of an active fluorophore from a fluorogenic substrate.\u00a0<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-1142 size-full aligncenter\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/imaging.jpg\" alt=\"imaging - western blot processes\" width=\"768\" height=\"461\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/imaging.jpg 768w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/imaging-300x180.jpg 300w\" sizes=\"auto, (max-width: 768px) 100vw, 768px\" \/><\/span><\/p>\n<h3><span class=\"ez-toc-section\" id=\"Imaging\"><\/span><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Imaging<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The last step in the Western blotting workflow before data analysis is image capture.\u00a0 You can perform the capturing step using a film, a CCD camera, or a scanner to collect the emitted light of the detection process. <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Then the emitted light can be converted to an electrical signal using a photomultiplier tube (PMT) or a CCD camera. The electrical signal is then digitized for image display and analysis.<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-1143 size-full aligncenter\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/western-blot-2.jpg\" alt=\" The Concept, Processes, and Applications of Western Blotting\" width=\"2560\" height=\"1700\" \/><\/span><\/p>\n<h3><span class=\"ez-toc-section\" id=\"Analysis\"><\/span><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"><b>Analysis<\/b><\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">The detected signals, using either X-ray film, scanners, or a charge-coupled device CCD camera, cause one or more visible protein bands on the membrane image.\u00a0 <\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">To estimate the molecular weight of the protein you can make a comparison with marker proteins and the amount of protein can be determined as this is related to band intensity (within the limits of the detection system).\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In most applications\u00a0of western blotting , it is enough to confirm protein presence and roughly estimate the amount. However, other applications demand a quantitative analysis that defines protein levels in either relative or absolute terms.<\/span><\/p>\n<p style=\"text-align: center;\"><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><strong><span style=\"font-size: 14pt;\">For more information about Western blot analysis, please visit our blog &#8220;How to Analyze <a href=\"https:\/\/praxilabs.com\/en\/blog\/2021\/08\/11\/how-to-analyze-western-blot-data\/\">Western Blot Data<\/a>&#8220;<\/span><\/strong><\/span><\/p>\n<h2><span class=\"ez-toc-section\" id=\"What_are_the_advantages_of_Western_blotting\"><\/span><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\">What are the advantages of Western blotting?<\/span><span class=\"ez-toc-section-end\"><\/span><\/h2>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Sensitivity: Because of its ability to detect as little as 0.1 nanograms of protein in a sample, the technique can theoretically serve as an effective early diagnostic tool, sensing even the slightest immunogenic response from a virus or bacteria in a patient sample.<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Specificity: The western blot technique owes its specificity to two big contributing factors. First, gel electrophoresis sorts a sample into proteins of different size, charge, and conformation. This process in itself is a huge step towards detection, as bands formed in the gel already give clues about the size of the protein or polypeptide of interest.<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"> The specificity of the antibody-antigen interaction serves as the second big factor. Because specific antibodies show affinity for specific proteins, the process can selectively detect a target protein even in a mixture of 300,000 different proteins.<\/span><\/p>\n<h2><span class=\"ez-toc-section\" id=\"Applications_of_Western_Blotting\"><\/span><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\">Applications of Western Blotting<\/span><span class=\"ez-toc-section-end\"><\/span><\/h2>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Western blot technique has a wide range of applications in scientific and clinical disciplines:<\/span><\/p>\n<h3><span class=\"ez-toc-section\" id=\"Western_Blot_Applications_in_Biological_Sciences\"><\/span><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\">Western Blot Applications in Biological Sciences<\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">A western blot is used to detect specific protein molecules from among a mixture of proteins. This mixture can include all of the proteins associated with a particular tissue or cell type. <\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Western blots can also be used to evaluate the size of a protein of interest and to measure the amount of protein expression. This procedure was named for its similarity to the previously invented method known as the <a href=\"https:\/\/en.wikipedia.org\/wiki\/Southern_blot#:~:text=A%20Southern%20blot%20is%20a,fragment%20detection%20by%20probe%20hybridization.\" target=\"_blank\" rel=\"noopener\">Southern blot<\/a>.\u00a0<\/span><\/p>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><strong><span style=\"font-size: 14pt;\">So we can summarize western blot uses as following :-<\/span><\/strong><\/span><\/p>\n<ul>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Application of western blotting technique helps to identify the presence of a specific protein both by size and through the binding of an antibody makes them well-suited for evaluating levels of protein expression in cells, and for monitoring fractions during protein purification.<\/span><\/li>\n<\/ul>\n<p><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-1144 size-full\" src=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Applications-of-Western-Blotting.jpg\" alt=\"Applications of Western Blotting\" width=\"1280\" height=\"847\" srcset=\"https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Applications-of-Western-Blotting.jpg 1280w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Applications-of-Western-Blotting-300x199.jpg 300w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Applications-of-Western-Blotting-1024x678.jpg 1024w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Applications-of-Western-Blotting-768x508.jpg 768w, https:\/\/praxilabs.com\/en\/blog\/wp-content\/uploads\/2020\/05\/Applications-of-Western-Blotting-310x205.jpg 310w\" sizes=\"auto, (max-width: 1280px) 100vw, 1280px\" \/><\/span><\/p>\n<ul>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Also, It is helpful for comparing expressions of a target protein from various tissues, or seeing how a particular protein responds to disease or drug treatment. <\/span><\/li>\n<li><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In many cases, the western blot is used in combination with other key antibody-based detection techniques, such as immunohistochemistry.<\/span><\/li>\n<\/ul>\n<h3><span class=\"ez-toc-section\" id=\"Western_Blot_Applications_in_Medical\"><\/span><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\">Western Blot Applications in Medical<\/span><span class=\"ez-toc-section-end\"><\/span><\/h3>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">\u00a0Western blots provide confirmation of results both in research and diagnostic testing.<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In recent medical field, Western Blot has a wide range of applications in medical diagnosis, such as the application of medical diagnosis for HIV (Human Immunodeficiency Virus) infection, BSE (Bovine Spongiform Encephalopathy, also known as &#8220;mad cow disease&#8221;), FIV (Feline Immunodeficiency Virus), HBV (Hepatitis B Virus) infection, and so on. Usually, Western Blot is used as a confirmatory test for these diseases, following a high sensitivity <a href=\"https:\/\/praxilabs.com\/en\/blog\/2021\/09\/20\/elisa-principle\/\">ELISA<\/a> (Enzyme-Linked Immuno Sorbent Assay) test with positive results.<\/span><\/p>\n<p><span style=\"font-weight: 400; font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"> For example, with HIV and prion disease, western blots are used as a key supplemental screen since their results are less ambiguous, and quicker than other methods.<\/span><\/p>\n<h4><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">What is the Western Blot test used for?<\/span><\/h4>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">A Western blot test is typically used to confirm a positive HIV diagnosis. During the test, a small sample of blood is taken and it is used to detect HIV antibodies, not the HIV virus itself. The Western blot test separates the blood proteins and detects the specific proteins (called HIV antibodies) that indicate an HIV infection. The Western blot is used to confirm a positive ELISA, and the combined tests are 99.9% accurate.<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">Also,\u00a0 Western blot test is used to confirm or contest a diagnosis of HIV or Lyme disease after an ELISA antibody test comes back positive or negative. Since the <a href=\"https:\/\/praxilabs.com\/en\/3d-simulations\/elisa-immunology-virtual-lab-simulation\">ELISA test<\/a> sometimes produces false positives, a second test is needed to further the diagnosis.<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\">In case of Lyme disease, the Western blot test may detect antibodies to <em>B. burgdorferi<\/em>, the bacteria that causes this condition.<\/span><\/p>\n<p><span style=\"font-size: 14pt; font-family: tahoma, arial, helvetica, sans-serif;\"> In case of HIV, the Western blot test may detect proteins from the envelope or core of the virus and enzymes generated by HIV infection.<\/span><\/p>\n<p style=\"text-align: center;\"><span style=\"font-family: tahoma, arial, helvetica, sans-serif; font-size: 14pt;\"><strong>PraxiLabs Virtual Labs include a range of\u00a0<a href=\"https:\/\/praxilabs.com\/en\/3d-science-simulations\" target=\"_blank\" rel=\"noopener\">3D science experiments<\/a>\u00a0in physics, chemistry and biology experiments<\/strong><\/span><\/p>\n<p style=\"text-align: center;\"><span style=\"font-family: tahoma, arial, helvetica, sans-serif;\"><strong><a class=\"maxbutton-3 maxbutton\" href=\"https:\/\/praxilabs.com\/en\/request-free-demo\"><span class='mb-text'>Request a Free Demo Now<\/span><\/a><\/strong><\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Western blot is an indispensable mechanism in the modern biomedical research laboratory, as well as in laboratories doing research in other areas. This technique is routinely used now for research purposes, for instance, clinical medical laboratories.\u00a0 Western blot can be used to identify a specific protein in a sample. Also, it provides information about protein &hellip;<\/p>\n","protected":false},"author":3,"featured_media":4445,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_lmt_disableupdate":"no","_lmt_disable":"no","footnotes":""},"categories":[6],"tags":[],"class_list":["post-388","post","type-post","status-publish","format-standard","has-post-thumbnail","","category-biology"],"modified_by":"Muhamed Elmesery","_links":{"self":[{"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/posts\/388","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/comments?post=388"}],"version-history":[{"count":19,"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/posts\/388\/revisions"}],"predecessor-version":[{"id":5388,"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/posts\/388\/revisions\/5388"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/media\/4445"}],"wp:attachment":[{"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/media?parent=388"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/categories?post=388"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/praxilabs.com\/en\/blog\/wp-json\/wp\/v2\/tags?post=388"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}